WebTo address these issues, we developed a new R/Shiny application, named shinyChromosome, as a GUI for the interactive creation of non-circular whole genome … Once it was activated, shinyChromosome could be used smoothly and easily. Launch shinyChromosome directly from R and GitHub. User can choose to run shinyChromosome installed on local computers (Windows, Mac or Linux) for a more preferable experience. Step 1: Install R and RStudio.
Shiny - Genome browser - RStudio
WebOct 1, 2024 · The shinyChromosome application consists of two functional parts, ui.R and server.R. The former (ui.R) defines the interface of shinyChromosome, the widgets to … WebSimilarly, shinyChromosome is an R/Shiny application for non-circular visualization of genomic data by aligning genomic data along all chromosomes of a single genome. trackViewer is a Bioconductor package used for the visualization of multi-omics data, including data of coverage, annotation, methylation and mutation, along a specified … bow photos
shinyChromosome Shiny application for interactive creation
WebApr 19, 2024 · As a major food crop and model organism, rice has been mostly studied with the largest number of functionally characterized genes among all crops. We previously built the funRiceGenes database including ~ 2800 functionally characterized rice genes and ~ 5000 members of different gene families. Since being published, the funRiceGenes … WebOct 1, 2024 · shinyChromosome: An R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes. 1 Europe PMC requires Javascript to function effectively. WebshinyChromosome: An R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes Article Full-text available Jan 2024 Yiming Yu Wen Yao Yuping Wang Fangfang Huang... gunhild carling 2022 savoy